@ Ontology Change Report @ First ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/161/fypo.obo @ Second ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/160/fypo.obo @ File Written at 2013.12.09 at 01:00:13 PST @ Number of classes changed: 44 @ Number of classes added: 0 @Classes modified from previous --- Class Changed: http://www.geneontology.org/go#FYPO_0002947 label: abnormal cell wall morphology - SubClassOf('abnormal cell wall morphology' PATO_0000051) - SubClassOf('abnormal cell wall morphology' 'abnormal cell wall') - SubClassOf('abnormal cell wall morphology' ObjectSomeValueFrom('qualifier' PATO_0000460)) - EquivalentClasses('abnormal cell wall morphology' ObjectIntersectionOf(PATO_0000051 ObjectSomeValueFrom('inheres_in' 'fungal-type cell wall') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal cell wall morphology' ObjectSomeValueFrom('inheres_in' 'fungal-type cell wall')) --- Class Changed: http://www.geneontology.org/go#GO_0019835 label: cytolysis + SubClassOf('cytolysis' 'cell death') - SubClassOf('cytolysis' 'cellular process') --- Class Changed: http://www.geneontology.org/go#FYPO_0002935 label: decreased mRNA level during vegetative growth - SubClassOf('decreased mRNA level during vegetative growth' ObjectSomeValueFrom('towards' 'mRNA')) - SubClassOf('decreased mRNA level during vegetative growth' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - SubClassOf('decreased mRNA level during vegetative growth' 'altered mRNA level during vegetative growth') - EquivalentClasses('decreased mRNA level during vegetative growth' ObjectIntersectionOf(PATO_0001163 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' 'mRNA')) ) - SubClassOf('decreased mRNA level during vegetative growth' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) - SubClassOf('decreased mRNA level during vegetative growth' 'decreased RNA level during vegetative growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0002938 label: normal mRNA level during vegetative growth - SubClassOf('normal mRNA level during vegetative growth' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - SubClassOf('normal mRNA level during vegetative growth' ObjectSomeValueFrom('towards' 'mRNA')) - SubClassOf('normal mRNA level during vegetative growth' 'normal RNA level during vegetative growth') - EquivalentClasses('normal mRNA level during vegetative growth' ObjectIntersectionOf(PATO_0001159 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('qualifier' PATO_0000461) ObjectSomeValueFrom('towards' 'mRNA')) ) - SubClassOf('normal mRNA level during vegetative growth' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) - SubClassOf('normal mRNA level during vegetative growth' ObjectSomeValueFrom('qualifier' PATO_0000461)) --- Class Changed: http://www.geneontology.org/go#FYPO_0000429 label: delayed G0 to G1 transition + SubClassOf('delayed G0 to G1 transition' 'abnormal cell cycle process') - SubClassOf('delayed G0 to G1 transition' 'abnormal G0 to G1 transition') --- Class Changed: http://www.geneontology.org/go#FYPO_0002954 label: increased S-adenosyl-3-thiopropylamine level during G0 - SubClassOf('increased S-adenosyl-3-thiopropylamine level during G0' 'increased level of substance in cell during G0') --- Class Changed: http://www.geneontology.org/go#FYPO_0002939 label: normal nuclear mRNA catabolic process - SubClassOf('normal nuclear mRNA catabolic process' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('normal nuclear mRNA catabolic process' ObjectSomeValueFrom('inheres_in' 'nuclear-transcribed mRNA catabolic process')) - SubClassOf('normal nuclear mRNA catabolic process' 'RNA metabolism phenotype') - EquivalentClasses('normal nuclear mRNA catabolic process' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'nuclear-transcribed mRNA catabolic process') ObjectSomeValueFrom('qualifier' PATO_0000461)) ) - SubClassOf('normal nuclear mRNA catabolic process' ObjectSomeValueFrom('qualifier' PATO_0000461)) - SubClassOf('normal nuclear mRNA catabolic process' 'normal metabolic process during vegetative growth') --- Class Changed: http://www.geneontology.org/go#SO_0000232 label: snoRNA_primary_transcript - SubClassOf('snoRNA_primary_transcript' 'nc_primary_transcript') --- Class Changed: http://www.geneontology.org/go#FYPO_0002936 label: increased mRNA level during vegetative growth - SubClassOf('increased mRNA level during vegetative growth' 'altered mRNA level during vegetative growth') - SubClassOf('increased mRNA level during vegetative growth' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) - SubClassOf('increased mRNA level during vegetative growth' ObjectSomeValueFrom('towards' 'mRNA')) - SubClassOf('increased mRNA level during vegetative growth' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - SubClassOf('increased mRNA level during vegetative growth' 'increased RNA level during vegetative growth') - EquivalentClasses('increased mRNA level during vegetative growth' ObjectIntersectionOf(PATO_0001162 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' 'mRNA')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002943 label: swollen spheroid cell during G0 to G1 transition - SubClassOf('swollen spheroid cell during G0 to G1 transition' ObjectSomeValueFrom('has_part' 'swollen cell')) - SubClassOf('swollen spheroid cell during G0 to G1 transition' 'swollen spheroid cell') - SubClassOf('swollen spheroid cell during G0 to G1 transition' ObjectSomeValueFrom('has_part' 'spheroid cell')) - SubClassOf('swollen spheroid cell during G0 to G1 transition' ObjectSomeValueFrom('exists_during' 'G0 to G1 transition')) - EquivalentClasses('swollen spheroid cell during G0 to G1 transition' ObjectIntersectionOf('cell phenotype' ObjectSomeValueFrom('exists_during' 'G0 to G1 transition') ObjectSomeValueFrom('has_part' 'swollen cell') ObjectSomeValueFrom('has_part' 'spheroid cell')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002937 label: decreased pre-mRNA level - SubClassOf('decreased pre-mRNA level' 'decreased RNA level during vegetative growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0000351 label: abnormal cell wall morphology during vegetative growth + SubClassOf('abnormal cell wall morphology during vegetative growth' PATO_0000051) - SubClassOf('abnormal cell wall morphology during vegetative growth' 'abnormal cell wall morphology') --- Class Changed: http://www.geneontology.org/go#FYPO_0001892 label: decreased level of middle meiotic gene RNA during late meiosis + SubClassOf('decreased level of middle meiotic gene RNA during late meiosis' 'decreased RNA level') - SubClassOf('decreased level of middle meiotic gene RNA during late meiosis' 'decreased RNA level during meiosis') --- Class Changed: http://www.geneontology.org/go#FYPO_0002488 label: cell lysis + SubClassOf('cell lysis' 'cellular process phenotype') - SubClassOf('cell lysis' 'cell phenotype') - SubClassOf('cell lysis' 'biological process phenotype') --- Class Changed: http://www.geneontology.org/go#SO_0000275 label: snoRNA - SubClassOf('snoRNA' ObjectSomeValueFrom('derives_from' 'snoRNA_primary_transcript')) - SubClassOf('snoRNA' 'ncRNA') --- Class Changed: http://www.geneontology.org/go#FYPO_0002945 label: increased RNA level during G0 - SubClassOf('increased RNA level during G0' 'increased level of substance in cell during G0') --- Class Changed: http://www.geneontology.org/go#FYPO_0002951 label: increased L-ergothioneine level during G0 - SubClassOf('increased L-ergothioneine level during G0' 'increased level of substance in cell during G0') --- Class Changed: http://www.geneontology.org/go#FYPO_0002946 label: abnormal cell wall - EquivalentClasses('abnormal cell wall' ObjectIntersectionOf(PATO_0001241 ObjectSomeValueFrom('inheres_in' 'fungal-type cell wall') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal cell wall' ObjectSomeValueFrom('inheres_in' 'fungal-type cell wall')) - SubClassOf('abnormal cell wall' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('abnormal cell wall' 'abnormal subcellular component') --- Class Changed: http://www.geneontology.org/go#FYPO_0000945 label: swollen spheroid vegetative cell - SubClassOf('swollen spheroid vegetative cell' 'swollen spheroid cell') --- Class Changed: http://www.geneontology.org/go#FYPO_0002960 label: increased level of DSR-containing meiosis gene RNA during vegetative growth - SubClassOf('increased level of DSR-containing meiosis gene RNA during vegetative growth' 'increased level of meiosis gene RNA during vegetative growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0000027 label: abnormal cell wall during vegetative growth - SubClassOf('abnormal cell wall during vegetative growth' 'abnormal cell wall') --- Class Changed: http://www.geneontology.org/go#FYPO_0002933 label: increased snoRNA level - SubClassOf('increased snoRNA level' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('increased snoRNA level' ObjectIntersectionOf(PATO_0001162 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' 'snoRNA')) ) - SubClassOf('increased snoRNA level' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - SubClassOf('increased snoRNA level' 'increased RNA level during vegetative growth') - SubClassOf('increased snoRNA level' ObjectSomeValueFrom('towards' 'snoRNA')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002948 label: delaminated cell wall - EquivalentClasses('delaminated cell wall' ObjectIntersectionOf(PATO_0001514 ObjectSomeValueFrom('inheres_in' 'fungal-type cell wall')) ) - SubClassOf('delaminated cell wall' 'abnormal cell wall morphology') - SubClassOf('delaminated cell wall' PATO_0001514) - SubClassOf('delaminated cell wall' ObjectSomeValueFrom('inheres_in' 'fungal-type cell wall')) --- Class Changed: http://www.geneontology.org/go#FYPO_0001129 label: abnormal protein localization to nucleus during vegetative growth - SubClassOf('abnormal protein localization to nucleus during vegetative growth' 'abnormal protein localization to nucleus') --- Class Changed: http://www.geneontology.org/go#FYPO_0002955 label: abnormal G0 to G1 transition - SubClassOf('abnormal G0 to G1 transition' 'abnormal cell cycle process') - SubClassOf('abnormal G0 to G1 transition' ObjectSomeValueFrom('qualifier' PATO_0000460)) - EquivalentClasses('abnormal G0 to G1 transition' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('inheres_in' 'G0 to G1 transition') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal G0 to G1 transition' ObjectSomeValueFrom('inheres_in' 'G0 to G1 transition')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002952 label: increased S-methyl-L-ergothioneine level during G0 - SubClassOf('increased S-methyl-L-ergothioneine level during G0' 'increased level of substance in cell during G0') --- Class Changed: http://www.geneontology.org/go#FYPO_0002950 label: increased N-acetyl-D-glucosaminate level during G0 - SubClassOf('increased N-acetyl-D-glucosaminate level during G0' 'increased level of substance in cell during G0') --- Class Changed: http://www.geneontology.org/go#FYPO_0002934 label: altered mRNA level during vegetative growth - SubClassOf('altered mRNA level during vegetative growth' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('altered mRNA level during vegetative growth' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) - SubClassOf('altered mRNA level during vegetative growth' 'altered RNA level during vegetative growth') - EquivalentClasses('altered mRNA level during vegetative growth' ObjectIntersectionOf(PATO_0001159 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('qualifier' PATO_0000460) ObjectSomeValueFrom('towards' 'mRNA')) ) - SubClassOf('altered mRNA level during vegetative growth' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - SubClassOf('altered mRNA level during vegetative growth' ObjectSomeValueFrom('towards' 'mRNA')) --- Class Changed: http://www.geneontology.org/go#FYPO_0000647 label: vegetative cell lysis + SubClassOf('vegetative cell lysis' 'cellular process phenotype during vegetative growth') - SubClassOf('vegetative cell lysis' 'vegetative cell phenotype') --- Class Changed: http://www.geneontology.org/go#FYPO_0002932 label: decreased snoRNA level - SubClassOf('decreased snoRNA level' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - SubClassOf('decreased snoRNA level' 'decreased RNA level during vegetative growth') - SubClassOf('decreased snoRNA level' ObjectSomeValueFrom('towards' 'snoRNA')) - SubClassOf('decreased snoRNA level' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('decreased snoRNA level' ObjectIntersectionOf(PATO_0001163 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' 'snoRNA')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0001036 label: delaminated cell wall during vegetative growth + SubClassOf('delaminated cell wall during vegetative growth' PATO_0001514) - SubClassOf('delaminated cell wall during vegetative growth' 'delaminated cell wall') --- Class Changed: http://www.geneontology.org/go#FYPO_0002953 label: increased S-adenosyl-L-methionine level during G0 - SubClassOf('increased S-adenosyl-L-methionine level during G0' 'increased level of substance in cell during G0') --- Class Changed: http://www.geneontology.org/go#FYPO_0002961 label: delaminated cell wall during G0 - SubClassOf('delaminated cell wall during G0' 'delaminated cell wall') --- Class Changed: http://www.geneontology.org/go#FYPO_0002949 label: increased level of substance in cell during G0 - SubClassOf('increased level of substance in cell during G0' 'increased level of substance in cell') --- Class Changed: http://www.geneontology.org/go#FYPO_0002959 label: decreased RNA level during meiosis - EquivalentClasses('decreased RNA level during meiosis' ObjectIntersectionOf(PATO_0001163 ObjectSomeValueFrom('exists_during' 'meiosis') ObjectSomeValueFrom('inheres_in' 'cell') ObjectSomeValueFrom('towards' 'ribonucleic acid')) ) - SubClassOf('decreased RNA level during meiosis' ObjectSomeValueFrom('inheres_in' 'cell')) - SubClassOf('decreased RNA level during meiosis' 'decreased RNA level') - SubClassOf('decreased RNA level during meiosis' ObjectSomeValueFrom('towards' 'ribonucleic acid')) - SubClassOf('decreased RNA level during meiosis' ObjectSomeValueFrom('exists_during' 'meiosis')) --- Class Changed: http://www.geneontology.org/go#GO_0010324 label: membrane invagination + SubClassOf('membrane invagination' 'single-organism membrane organization') - SubClassOf('membrane invagination' 'membrane organization') --- Class Changed: http://www.geneontology.org/go#FYPO_0000174 label: abnormal cell wall biogenesis + SubClassOf('abnormal cell wall biogenesis' ObjectSomeValueFrom('results_in_formation_of' 'abnormal cell wall during vegetative growth')) - SubClassOf('abnormal cell wall biogenesis' ObjectSomeValueFrom('results_in_formation_of' 'abnormal cell wall')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002957 label: abnormal protein localization to nucleus during meiosis - SubClassOf('abnormal protein localization to nucleus during meiosis' ObjectSomeValueFrom('inheres_in' 'protein localization to nucleus')) - SubClassOf('abnormal protein localization to nucleus during meiosis' 'abnormal protein localization to nucleus') - SubClassOf('abnormal protein localization to nucleus during meiosis' ObjectSomeValueFrom('happens_during' 'meiosis')) - EquivalentClasses('abnormal protein localization to nucleus during meiosis' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'meiosis') ObjectSomeValueFrom('inheres_in' 'protein localization to nucleus') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal protein localization to nucleus during meiosis' ObjectSomeValueFrom('qualifier' PATO_0000460)) --- Class Changed: http://www.geneontology.org/go#FYPO_0002942 label: swollen spheroid cell during G0 - SubClassOf('swollen spheroid cell during G0' 'swollen spheroid cell') --- Class Changed: http://www.geneontology.org/go#FYPO_0002956 label: abnormal protein localization to nucleus - SubClassOf('abnormal protein localization to nucleus' 'abnormal protein localization') - EquivalentClasses('abnormal protein localization to nucleus' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('inheres_in' 'protein localization to nucleus') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal protein localization to nucleus' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('abnormal protein localization to nucleus' ObjectSomeValueFrom('inheres_in' 'protein localization to nucleus')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002958 label: abnormal protein localization to Mei2 nuclear dot - SubClassOf('abnormal protein localization to Mei2 nuclear dot' ObjectSomeValueFrom('qualifier' PATO_0000460)) - EquivalentClasses('abnormal protein localization to Mei2 nuclear dot' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('inheres_in' GO_1902549) ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal protein localization to Mei2 nuclear dot' ObjectSomeValueFrom('inheres_in' GO_1902549)) - SubClassOf('abnormal protein localization to Mei2 nuclear dot' 'abnormal protein localization to nucleus during meiosis') --- Class Changed: http://www.geneontology.org/go#FYPO_0002941 label: swollen spheroid cell - SubClassOf('swollen spheroid cell' ObjectSomeValueFrom('has_part' 'spheroid cell')) - SubClassOf('swollen spheroid cell' 'spheroid cell') - EquivalentClasses('swollen spheroid cell' ObjectIntersectionOf('cell phenotype' ObjectSomeValueFrom('has_part' 'swollen cell') ObjectSomeValueFrom('has_part' 'spheroid cell')) ) - SubClassOf('swollen spheroid cell' ObjectSomeValueFrom('has_part' 'swollen cell')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002940 label: normal cell population growth on micafungin - SubClassOf('normal cell population growth on micafungin' 'normal vegetative cell population growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0002944 label: decreased RNA level during G0 - SubClassOf('decreased RNA level during G0' 'decreased RNA level') @New Classes